LangCell: Language-Cell Pre-training for Cell Identity Understanding
Paper • 2405.06708 • Published
Datasets:
ArXiv:
License:
Dataset Preview
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed
Error code: DatasetGenerationError
Exception: IndexError
Message: list index out of range
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1901, in _prepare_split_single
original_shard_lengths[original_shard_id] += len(table)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^
IndexError: list index out of range
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1922, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
indices uint64 |
|---|
14,340,059 |
14,340,561 |
14,341,066 |
14,341,098 |
14,342,958 |
14,344,068 |
14,344,243 |
14,344,463 |
14,344,508 |
14,344,540 |
14,344,713 |
14,344,771 |
14,345,335 |
14,345,590 |
14,345,618 |
14,345,787 |
14,345,906 |
14,346,285 |
14,346,421 |
14,346,457 |
14,359,356 |
14,359,545 |
14,359,691 |
14,359,789 |
14,360,037 |
14,360,358 |
14,360,415 |
14,360,665 |
14,360,679 |
14,360,779 |
14,360,960 |
14,361,108 |
14,361,150 |
14,361,175 |
14,361,485 |
14,361,722 |
14,361,786 |
14,361,906 |
14,361,934 |
14,362,102 |
14,362,139 |
14,362,215 |
14,362,229 |
14,362,281 |
14,362,313 |
14,362,325 |
14,362,386 |
14,362,445 |
14,362,511 |
14,362,546 |
14,362,592 |
14,362,597 |
14,362,622 |
14,362,690 |
14,362,730 |
14,362,793 |
14,362,812 |
14,362,834 |
14,362,837 |
14,362,949 |
14,362,951 |
14,362,959 |
14,362,977 |
14,362,989 |
14,363,030 |
14,363,122 |
14,363,134 |
14,363,157 |
14,363,158 |
14,363,213 |
14,363,255 |
14,363,261 |
14,363,327 |
14,363,408 |
14,363,429 |
14,363,473 |
14,363,564 |
14,363,583 |
14,363,634 |
14,363,635 |
14,363,639 |
14,363,666 |
14,363,723 |
14,363,733 |
14,363,765 |
14,363,790 |
14,363,798 |
14,363,827 |
14,363,831 |
14,363,848 |
14,363,899 |
14,363,900 |
14,364,015 |
14,364,122 |
14,364,125 |
14,364,149 |
14,364,172 |
14,364,173 |
14,364,187 |
14,364,226 |
End of preview.
The dataset scLibrary is the pre-training dataset used by the LangCell model.
You can use git-lfs to download sclibrary.dataset from this repository, and then use the following code to load the data:
from datasets import load_from_disk
sclibrary=load_from_disk("/path/to/sclibrary.dataset")
Model github: https://github.com/PharMolix/LangCell
Paper: https://arxiv.org/abs/2405.06708
Citation
If you find scLibrary helpful to your research, please consider giving our Github repository a 🌟star and 📎citing the following article. Thank you for your support!
@misc{zhao2024langcell,
title={LangCell: Language-Cell Pre-training for Cell Identity Understanding},
author={Suyuan Zhao and Jiahuan Zhang and Yizhen Luo and Yushuai Wu and Zaiqing Nie},
year={2024},
eprint={2405.06708},
archivePrefix={arXiv},
primaryClass={q-bio.GN}
}
- Downloads last month
- 13